TargeTALE

A web tool to map TALE genes in the genome of Xanthomonas spp. strains and their potential targets

The pipeline

TargeTALE is an web pipeline that predicts Transcription Activator-like Effectors (TALEs) in the genome of Xanthomonas spp. strains and the genes that they target in the genome of different model and non-model organisms, such as rice (O. sativa). The TALE prediction is performed using AnnoTALE and the hits are compared to a set of promoters derived from Osiris using TALgetter. Finally, the biological processes affected by each TALE are identified using the Uniprot-GOA API.

Clone Us

The source code of TargeTALE is publicly available at GitHub ^^